swOperation/node_modules/@antv/g2plot/lib/plots/venn/layout/layout.js

"use strict";
Object.defineProperty(exports, "__esModule", { value: true });
exports.scaleSolution = exports.normalizeSolution = exports.disjointCluster = exports.lossFunction = exports.greedyLayout = exports.constrainedMDSLayout = exports.bestInitialLayout = exports.getDistanceMatrices = exports.distanceFromIntersectArea = exports.venn = void 0;
var fmin_1 = require("fmin");
var circleintersection_1 = require("./circleintersection");
/** given a list of set objects, and their corresponding overlaps.
updates the (x, y, radius) attribute on each set such that their positions
roughly correspond to the desired overlaps */
function venn(areas, parameters) {
    parameters = parameters || {};
    parameters.maxIterations = parameters.maxIterations || 500;
    var initialLayout = parameters.initialLayout || bestInitialLayout;
    var loss = parameters.lossFunction || lossFunction;
    // add in missing pairwise areas as having 0 size
    areas = addMissingAreas(areas);
    // initial layout is done greedily
    var circles = initialLayout(areas, parameters);
    // transform x/y coordinates to a vector to optimize
    var initial = [], setids = [];
    var setid;
    for (setid in circles) {
        // eslint-disable-next-line
        if (circles.hasOwnProperty(setid)) {
            initial.push(circles[setid].x);
            initial.push(circles[setid].y);
            setids.push(setid);
        }
    }
    // optimize initial layout from our loss function
    var solution = (0, fmin_1.nelderMead)(function (values) {
        var current = {};
        for (var i = 0; i < setids.length; ++i) {
            var setid_1 = setids[i];
            current[setid_1] = {
                x: values[2 * i],
                y: values[2 * i + 1],
                radius: circles[setid_1].radius,
                // size : circles[setid].size
            };
        }
        return loss(current, areas);
    }, initial, parameters);
    // transform solution vector back to x/y points
    var positions = solution.x;
    for (var i = 0; i < setids.length; ++i) {
        setid = setids[i];
        circles[setid].x = positions[2 * i];
        circles[setid].y = positions[2 * i + 1];
    }
    return circles;
}
exports.venn = venn;
var SMALL = 1e-10;
/** Returns the distance necessary for two circles of radius r1 + r2 to
have the overlap area 'overlap' */
function distanceFromIntersectArea(r1, r2, overlap) {
    // handle complete overlapped circles
    if (Math.min(r1, r2) * Math.min(r1, r2) * Math.PI <= overlap + SMALL) {
        return Math.abs(r1 - r2);
    }
    return (0, fmin_1.bisect)(function (distance) {
        return (0, circleintersection_1.circleOverlap)(r1, r2, distance) - overlap;
    }, 0, r1 + r2);
}
exports.distanceFromIntersectArea = distanceFromIntersectArea;
/** Missing pair-wise intersection area data can cause problems:
 treating as an unknown means that sets will be laid out overlapping,
 which isn't what people expect. To reflect that we want disjoint sets
 here, set the overlap to 0 for all missing pairwise set intersections */
function addMissingAreas(areas) {
    areas = areas.slice();
    // two circle intersections that aren't defined
    var ids = [], pairs = {};
    var i, j, a, b;
    for (i = 0; i < areas.length; ++i) {
        var area = areas[i];
        if (area.sets.length == 1) {
            ids.push(area.sets[0]);
        }
        else if (area.sets.length == 2) {
            a = area.sets[0];
            b = area.sets[1];
            // @ts-ignore
            pairs[[a, b]] = true;
            // @ts-ignore
            pairs[[b, a]] = true;
        }
    }
    ids.sort(function (a, b) {
        return a > b ? 1 : -1;
    });
    for (i = 0; i < ids.length; ++i) {
        a = ids[i];
        for (j = i + 1; j < ids.length; ++j) {
            b = ids[j];
            // @ts-ignore
            if (!([a, b] in pairs)) {
                areas.push({ sets: [a, b], size: 0 });
            }
        }
    }
    return areas;
}
/// Returns two matrices, one of the euclidean distances between the sets
/// and the other indicating if there are subset or disjoint set relationships
function getDistanceMatrices(areas, sets, setids) {
    // initialize an empty distance matrix between all the points
    var distances = (0, fmin_1.zerosM)(sets.length, sets.length), constraints = (0, fmin_1.zerosM)(sets.length, sets.length);
    // compute required distances between all the sets such that
    // the areas match
    areas
        .filter(function (x) {
        return x.sets.length == 2;
    })
        .map(function (current) {
        var left = setids[current.sets[0]], right = setids[current.sets[1]], r1 = Math.sqrt(sets[left].size / Math.PI), r2 = Math.sqrt(sets[right].size / Math.PI), distance = distanceFromIntersectArea(r1, r2, current.size);
        distances[left][right] = distances[right][left] = distance;
        // also update constraints to indicate if its a subset or disjoint
        // relationship
        var c = 0;
        if (current.size + 1e-10 >= Math.min(sets[left].size, sets[right].size)) {
            c = 1;
        }
        else if (current.size <= 1e-10) {
            c = -1;
        }
        constraints[left][right] = constraints[right][left] = c;
    });
    return { distances: distances, constraints: constraints };
}
exports.getDistanceMatrices = getDistanceMatrices;
/// computes the gradient and loss simulatenously for our constrained MDS optimizer
function constrainedMDSGradient(x, fxprime, distances, constraints) {
    var loss = 0, i;
    for (i = 0; i < fxprime.length; ++i) {
        fxprime[i] = 0;
    }
    for (i = 0; i < distances.length; ++i) {
        var xi = x[2 * i], yi = x[2 * i + 1];
        for (var j = i + 1; j < distances.length; ++j) {
            var xj = x[2 * j], yj = x[2 * j + 1], dij = distances[i][j], constraint = constraints[i][j];
            var squaredDistance = (xj - xi) * (xj - xi) + (yj - yi) * (yj - yi), distance_1 = Math.sqrt(squaredDistance), delta = squaredDistance - dij * dij;
            if ((constraint > 0 && distance_1 <= dij) || (constraint < 0 && distance_1 >= dij)) {
                continue;
            }
            loss += 2 * delta * delta;
            fxprime[2 * i] += 4 * delta * (xi - xj);
            fxprime[2 * i + 1] += 4 * delta * (yi - yj);
            fxprime[2 * j] += 4 * delta * (xj - xi);
            fxprime[2 * j + 1] += 4 * delta * (yj - yi);
        }
    }
    return loss;
}
/// takes the best working variant of either constrained MDS or greedy
function bestInitialLayout(areas, params) {
    var initial = greedyLayout(areas, params);
    var loss = params.lossFunction || lossFunction;
    // greedylayout is sufficient for all 2/3 circle cases. try out
    // constrained MDS for higher order problems, take its output
    // if it outperforms. (greedy is aesthetically better on 2/3 circles
    // since it axis aligns)
    if (areas.length >= 8) {
        var constrained = constrainedMDSLayout(areas, params), constrainedLoss = loss(constrained, areas), greedyLoss = loss(initial, areas);
        if (constrainedLoss + 1e-8 < greedyLoss) {
            initial = constrained;
        }
    }
    return initial;
}
exports.bestInitialLayout = bestInitialLayout;
/// use the constrained MDS variant to generate an initial layout
function constrainedMDSLayout(areas, params) {
    params = params || {};
    var restarts = params.restarts || 10;
    // bidirectionally map sets to a rowid  (so we can create a matrix)
    var sets = [], setids = {};
    var i;
    for (i = 0; i < areas.length; ++i) {
        var area = areas[i];
        if (area.sets.length == 1) {
            setids[area.sets[0]] = sets.length;
            sets.push(area);
        }
    }
    var matrices = getDistanceMatrices(areas, sets, setids);
    var distances = matrices.distances;
    var constraints = matrices.constraints;
    // keep distances bounded, things get messed up otherwise.
    // TODO: proper preconditioner?
    var norm = (0, fmin_1.norm2)(distances.map(fmin_1.norm2)) / distances.length;
    distances = distances.map(function (row) {
        return row.map(function (value) {
            return value / norm;
        });
    });
    var obj = function (x, fxprime) {
        return constrainedMDSGradient(x, fxprime, distances, constraints);
    };
    var best, current;
    for (i = 0; i < restarts; ++i) {
        var initial = (0, fmin_1.zeros)(distances.length * 2).map(Math.random);
        current = (0, fmin_1.conjugateGradient)(obj, initial, params);
        if (!best || current.fx < best.fx) {
            best = current;
        }
    }
    var positions = best.x;
    // translate rows back to (x,y,radius) coordinates
    var circles = {};
    for (i = 0; i < sets.length; ++i) {
        var set = sets[i];
        circles[set.sets[0]] = {
            x: positions[2 * i] * norm,
            y: positions[2 * i + 1] * norm,
            radius: Math.sqrt(set.size / Math.PI),
        };
    }
    if (params.history) {
        for (i = 0; i < params.history.length; ++i) {
            (0, fmin_1.scale)(params.history[i].x, norm);
        }
    }
    return circles;
}
exports.constrainedMDSLayout = constrainedMDSLayout;
/** Lays out a Venn diagram greedily, going from most overlapped sets to
least overlapped, attempting to position each new set such that the
overlapping areas to already positioned sets are basically right */
function greedyLayout(areas, params) {
    var loss = params && params.lossFunction ? params.lossFunction : lossFunction;
    // define a circle for each set
    var circles = {}, setOverlaps = {};
    var set;
    for (var i = 0; i < areas.length; ++i) {
        var area = areas[i];
        if (area.sets.length == 1) {
            set = area.sets[0];
            circles[set] = {
                x: 1e10,
                y: 1e10,
                // rowid: circles.length, // fix to ->
                rowid: Object.keys(circles).length,
                size: area.size,
                radius: Math.sqrt(area.size / Math.PI),
            };
            setOverlaps[set] = [];
        }
    }
    areas = areas.filter(function (a) {
        return a.sets.length == 2;
    });
    // map each set to a list of all the other sets that overlap it
    for (var i = 0; i < areas.length; ++i) {
        var current = areas[i];
        // eslint-disable-next-line
        var weight = current.hasOwnProperty('weight') ? current.weight : 1.0;
        var left = current.sets[0], right = current.sets[1];
        // completely overlapped circles shouldn't be positioned early here
        if (current.size + SMALL >= Math.min(circles[left].size, circles[right].size)) {
            weight = 0;
        }
        setOverlaps[left].push({ set: right, size: current.size, weight: weight });
        setOverlaps[right].push({ set: left, size: current.size, weight: weight });
    }
    // get list of most overlapped sets
    var mostOverlapped = [];
    for (set in setOverlaps) {
        // eslint-disable-next-line
        if (setOverlaps.hasOwnProperty(set)) {
            var size = 0;
            for (var i = 0; i < setOverlaps[set].length; ++i) {
                size += setOverlaps[set][i].size * setOverlaps[set][i].weight;
            }
            mostOverlapped.push({ set: set, size: size });
        }
    }
    // sort by size desc
    function sortOrder(a, b) {
        return b.size - a.size;
    }
    mostOverlapped.sort(sortOrder);
    // keep track of what sets have been laid out
    var positioned = {};
    function isPositioned(element) {
        return element.set in positioned;
    }
    // adds a point to the output
    function positionSet(point, index) {
        circles[index].x = point.x;
        circles[index].y = point.y;
        positioned[index] = true;
    }
    // add most overlapped set at (0,0)
    positionSet({ x: 0, y: 0 }, mostOverlapped[0].set);
    // get distances between all points. TODO, necessary?
    // answer: probably not
    // var distances = venn.getDistanceMatrices(circles, areas).distances;
    for (var i = 1; i < mostOverlapped.length; ++i) {
        var setIndex = mostOverlapped[i].set, overlap = setOverlaps[setIndex].filter(isPositioned);
        set = circles[setIndex];
        overlap.sort(sortOrder);
        if (overlap.length === 0) {
            // this shouldn't happen anymore with addMissingAreas
            throw 'ERROR: missing pairwise overlap information';
        }
        var points = [];
        for (var j = 0; j < overlap.length; ++j) {
            // get appropriate distance from most overlapped already added set
            var p1 = circles[overlap[j].set], d1 = distanceFromIntersectArea(set.radius, p1.radius, overlap[j].size);
            // sample positions at 90 degrees for maximum aesthetics
            points.push({ x: p1.x + d1, y: p1.y });
            points.push({ x: p1.x - d1, y: p1.y });
            points.push({ y: p1.y + d1, x: p1.x });
            points.push({ y: p1.y - d1, x: p1.x });
            // if we have at least 2 overlaps, then figure out where the
            // set should be positioned analytically and try those too
            for (var k = j + 1; k < overlap.length; ++k) {
                var p2 = circles[overlap[k].set], d2 = distanceFromIntersectArea(set.radius, p2.radius, overlap[k].size);
                var extraPoints = (0, circleintersection_1.circleCircleIntersection)({ x: p1.x, y: p1.y, radius: d1 }, { x: p2.x, y: p2.y, radius: d2 });
                for (var l = 0; l < extraPoints.length; ++l) {
                    points.push(extraPoints[l]);
                }
            }
        }
        // we have some candidate positions for the set, examine loss
        // at each position to figure out where to put it at
        var bestLoss = 1e50, bestPoint = points[0];
        for (var j = 0; j < points.length; ++j) {
            circles[setIndex].x = points[j].x;
            circles[setIndex].y = points[j].y;
            var localLoss = loss(circles, areas);
            if (localLoss < bestLoss) {
                bestLoss = localLoss;
                bestPoint = points[j];
            }
        }
        positionSet(bestPoint, setIndex);
    }
    return circles;
}
exports.greedyLayout = greedyLayout;
/** Given a bunch of sets, and the desired overlaps between these sets - computes
the distance from the actual overlaps to the desired overlaps. Note that
this method ignores overlaps of more than 2 circles */
function lossFunction(sets, overlaps) {
    var output = 0;
    function getCircles(indices) {
        return indices.map(function (i) {
            return sets[i];
        });
    }
    for (var i = 0; i < overlaps.length; ++i) {
        var area = overlaps[i];
        var overlap = void 0;
        if (area.sets.length == 1) {
            continue;
        }
        else if (area.sets.length == 2) {
            var left = sets[area.sets[0]], right = sets[area.sets[1]];
            overlap = (0, circleintersection_1.circleOverlap)(left.radius, right.radius, (0, circleintersection_1.distance)(left, right));
        }
        else {
            overlap = (0, circleintersection_1.intersectionArea)(getCircles(area.sets));
        }
        // eslint-disable-next-line
        var weight = area.hasOwnProperty('weight') ? area.weight : 1.0;
        output += weight * (overlap - area.size) * (overlap - area.size);
    }
    return output;
}
exports.lossFunction = lossFunction;
// orientates a bunch of circles to point in orientation
function orientateCircles(circles, orientation, orientationOrder) {
    if (orientationOrder === null) {
        circles.sort(function (a, b) {
            return b.radius - a.radius;
        });
    }
    else {
        circles.sort(orientationOrder);
    }
    var i;
    // shift circles so largest circle is at (0, 0)
    if (circles.length > 0) {
        var largestX = circles[0].x, largestY = circles[0].y;
        for (i = 0; i < circles.length; ++i) {
            circles[i].x -= largestX;
            circles[i].y -= largestY;
        }
    }
    if (circles.length == 2) {
        // if the second circle is a subset of the first, arrange so that
        // it is off to one side. hack for https://github.com/benfred/venn.js/issues/120
        var dist = (0, circleintersection_1.distance)(circles[0], circles[1]);
        if (dist < Math.abs(circles[1].radius - circles[0].radius)) {
            circles[1].x = circles[0].x + circles[0].radius - circles[1].radius - 1e-10;
            circles[1].y = circles[0].y;
        }
    }
    // rotate circles so that second largest is at an angle of 'orientation'
    // from largest
    if (circles.length > 1) {
        var rotation = Math.atan2(circles[1].x, circles[1].y) - orientation;
        var x = void 0, y = void 0;
        var c = Math.cos(rotation), s = Math.sin(rotation);
        for (i = 0; i < circles.length; ++i) {
            x = circles[i].x;
            y = circles[i].y;
            circles[i].x = c * x - s * y;
            circles[i].y = s * x + c * y;
        }
    }
    // mirror solution if third solution is above plane specified by
    // first two circles
    if (circles.length > 2) {
        var angle = Math.atan2(circles[2].x, circles[2].y) - orientation;
        while (angle < 0) {
            angle += 2 * Math.PI;
        }
        while (angle > 2 * Math.PI) {
            angle -= 2 * Math.PI;
        }
        if (angle > Math.PI) {
            var slope = circles[1].y / (1e-10 + circles[1].x);
            for (i = 0; i < circles.length; ++i) {
                var d = (circles[i].x + slope * circles[i].y) / (1 + slope * slope);
                circles[i].x = 2 * d - circles[i].x;
                circles[i].y = 2 * d * slope - circles[i].y;
            }
        }
    }
}
function disjointCluster(circles) {
    // union-find clustering to get disjoint sets
    circles.map(function (circle) {
        circle.parent = circle;
    });
    // path compression step in union find
    function find(circle) {
        if (circle.parent !== circle) {
            circle.parent = find(circle.parent);
        }
        return circle.parent;
    }
    function union(x, y) {
        var xRoot = find(x), yRoot = find(y);
        xRoot.parent = yRoot;
    }
    // get the union of all overlapping sets
    for (var i = 0; i < circles.length; ++i) {
        for (var j = i + 1; j < circles.length; ++j) {
            var maxDistance = circles[i].radius + circles[j].radius;
            if ((0, circleintersection_1.distance)(circles[i], circles[j]) + 1e-10 < maxDistance) {
                union(circles[j], circles[i]);
            }
        }
    }
    // find all the disjoint clusters and group them together
    var disjointClusters = {};
    var setid;
    for (var i = 0; i < circles.length; ++i) {
        setid = find(circles[i]).parent.setid;
        if (!(setid in disjointClusters)) {
            disjointClusters[setid] = [];
        }
        disjointClusters[setid].push(circles[i]);
    }
    // cleanup bookkeeping
    circles.map(function (circle) {
        delete circle.parent;
    });
    // return in more usable form
    var ret = [];
    for (setid in disjointClusters) {
        // eslint-disable-next-line
        if (disjointClusters.hasOwnProperty(setid)) {
            ret.push(disjointClusters[setid]);
        }
    }
    return ret;
}
exports.disjointCluster = disjointCluster;
function getBoundingBox(circles) {
    var minMax = function (d) {
        var hi = Math.max.apply(null, circles.map(function (c) {
            return c[d] + c.radius;
        })), lo = Math.min.apply(null, circles.map(function (c) {
            return c[d] - c.radius;
        }));
        return { max: hi, min: lo };
    };
    return { xRange: minMax('x'), yRange: minMax('y') };
}
function normalizeSolution(solution, orientation, orientationOrder) {
    if (orientation === null) {
        orientation = Math.PI / 2;
    }
    // work with a list instead of a dictionary, and take a copy so we
    // don't mutate input
    var circles = [], i, setid;
    for (setid in solution) {
        // eslint-disable-next-line
        if (solution.hasOwnProperty(setid)) {
            var previous = solution[setid];
            circles.push({ x: previous.x, y: previous.y, radius: previous.radius, setid: setid });
        }
    }
    // get all the disjoint clusters
    var clusters = disjointCluster(circles);
    // orientate all disjoint sets, get sizes
    for (i = 0; i < clusters.length; ++i) {
        orientateCircles(clusters[i], orientation, orientationOrder);
        var bounds = getBoundingBox(clusters[i]);
        clusters[i].size = (bounds.xRange.max - bounds.xRange.min) * (bounds.yRange.max - bounds.yRange.min);
        clusters[i].bounds = bounds;
    }
    clusters.sort(function (a, b) {
        return b.size - a.size;
    });
    // orientate the largest at 0,0, and get the bounds
    circles = clusters[0];
    // @ts-ignore fixme 从逻辑上看似乎是不对的，后续看看
    var returnBounds = circles.bounds;
    var spacing = (returnBounds.xRange.max - returnBounds.xRange.min) / 50;
    function addCluster(cluster, right, bottom) {
        if (!cluster)
            return;
        var bounds = cluster.bounds;
        var xOffset, yOffset, centreing;
        if (right) {
            xOffset = returnBounds.xRange.max - bounds.xRange.min + spacing;
        }
        else {
            xOffset = returnBounds.xRange.max - bounds.xRange.max;
            centreing = (bounds.xRange.max - bounds.xRange.min) / 2 - (returnBounds.xRange.max - returnBounds.xRange.min) / 2;
            if (centreing < 0)
                xOffset += centreing;
        }
        if (bottom) {
            yOffset = returnBounds.yRange.max - bounds.yRange.min + spacing;
        }
        else {
            yOffset = returnBounds.yRange.max - bounds.yRange.max;
            centreing = (bounds.yRange.max - bounds.yRange.min) / 2 - (returnBounds.yRange.max - returnBounds.yRange.min) / 2;
            if (centreing < 0)
                yOffset += centreing;
        }
        for (var j = 0; j < cluster.length; ++j) {
            cluster[j].x += xOffset;
            cluster[j].y += yOffset;
            circles.push(cluster[j]);
        }
    }
    var index = 1;
    while (index < clusters.length) {
        addCluster(clusters[index], true, false);
        addCluster(clusters[index + 1], false, true);
        addCluster(clusters[index + 2], true, true);
        index += 3;
        // have one cluster (in top left). lay out next three relative
        // to it in a grid
        returnBounds = getBoundingBox(circles);
    }
    // convert back to solution form
    var ret = {};
    for (i = 0; i < circles.length; ++i) {
        ret[circles[i].setid] = circles[i];
    }
    return ret;
}
exports.normalizeSolution = normalizeSolution;
/** Scales a solution from venn.venn or venn.greedyLayout such that it fits in
a rectangle of width/height - with padding around the borders. also
centers the diagram in the available space at the same time */
function scaleSolution(solution, width, height, padding) {
    var circles = [], setids = [];
    for (var setid in solution) {
        // eslint-disable-next-line
        if (solution.hasOwnProperty(setid)) {
            setids.push(setid);
            circles.push(solution[setid]);
        }
    }
    width -= 2 * padding;
    height -= 2 * padding;
    var bounds = getBoundingBox(circles), xRange = bounds.xRange, yRange = bounds.yRange;
    if (xRange.max == xRange.min || yRange.max == yRange.min) {
        console.log('not scaling solution: zero size detected');
        return solution;
    }
    var xScaling = width / (xRange.max - xRange.min), yScaling = height / (yRange.max - yRange.min), scaling = Math.min(yScaling, xScaling), 
    // while we're at it, center the diagram too
    xOffset = (width - (xRange.max - xRange.min) * scaling) / 2, yOffset = (height - (yRange.max - yRange.min) * scaling) / 2;
    var scaled = {};
    for (var i = 0; i < circles.length; ++i) {
        var circle = circles[i];
        scaled[setids[i]] = {
            radius: scaling * circle.radius,
            x: padding + xOffset + (circle.x - xRange.min) * scaling,
            y: padding + yOffset + (circle.y - yRange.min) * scaling,
        };
    }
    return scaled;
}
exports.scaleSolution = scaleSolution;
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